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1

The Perseus computational platform for comprehensive analysis of (prote)omics data

Tyanova, Stefka, Temu, Tikira, Sinitcyn, Pavel, Carlson, Arthur, Hein, Marco Y, Geiger, Tamar, Mann, Matthias, Cox, Jürgen

Journal:

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

2

Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

Sharma, Kirti, D’Souza, Rochelle C.J., Tyanova, Stefka, Schaab, Christoph, Wiśniewski, Jacek R., Cox, Jürgen, Mann, Matthias

Journal:

Year:

2014

Language:

english

File:

PDF, 1.89 MB

english, 2014

3

A Mass Spectrometry-Based Approach for Mapping Protein Subcellular Localization Reveals the Spatial Proteome of Mouse Primary Neurons

Itzhak, Daniel N., Davies, Colin, Tyanova, Stefka, Mishra, Archana, Williamson, James, Antrobus, Robin, Cox, Jürgen, Weekes, Michael P., Borner, Georg H.H.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.05 MB

english, 2017

4

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles

Deeb, Sally J., Tyanova, Stefka, Hummel, Michael, Schmidt-Supprian, Marc, Cox, Juergen, Mann, Matthias

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 5.08 MB

english, 2015

5

SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells

Itzhak, Daniel N., Sacco, Francesca, Nagaraj, Nagarjuna, Tyanova, Stefka, Mann, Matthias, Murgia, Marta

Journal:

Disease Models & Mechanisms

Year:

2019

File:

PDF, 12.61 MB

2019

6

Global, quantitative and dynamic mapping of protein subcellular localization

Itzhak, Daniel N, Tyanova, Stefka, Cox, Jürgen, Borner, Georg HH

Journal:

Year:

2016

Language:

english

File:

PDF, 3.00 MB

english, 2016

7

Cell type– and brain region–resolved mouse brain proteome

Sharma, Kirti, Schmitt, Sebastian, Bergner, Caroline G, Tyanova, Stefka, Kannaiyan, Nirmal, Manrique-Hoyos, Natalia, Kongi, Karina, Cantuti, Ludovico, Hanisch, Uwe-Karsten, Philips, Mari-Anne, Rossner

Journal:

Nature Neuroscience

Year:

2015

Language:

english

File:

PDF, 6.49 MB

english, 2015

8

Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice

Overmyer, Katherine A, Tyanova, Stefka, Hebert, Alex S, Westphall, Michael S, Cox, Jürgen, Coon, Joshua J

Journal:

Nature Protocols

Year:

2018

Language:

english

File:

PDF, 665 KB

english, 2018

9

Proteomics reveals the effects of sustained weight loss on the human plasma proteome

Geyer, Philipp E, Wewer Albrechtsen, Nicolai J, Tyanova, Stefka, Grassl, Niklas, Iepsen, Eva W, Lundgren, Julie, Madsbad, Sten, Holst, Jens J, Torekov, Signe S, Mann, Matthias

Journal:

Molecular Systems Biology

Year:

2016

Language:

english

File:

PDF, 5.18 MB

english, 2016

10

The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications

Iglesias-Gato, Diego, Thysell, Elin, Tyanova, Stefka, Crnalic, Sead, Santos, Alberto, Lima, Thiago S, Geiger, Tamar, Cox, Juergen, Widmark, Anders, Bergh, Anders, Mann, Matthias, Flores-Morales, Amilc

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 4.81 MB

english, 2018

11

Visualization of LC-MS/MS proteomics data in MaxQuant

Tyanova, Stefka, Temu, Tikira, Carlson, Arthur, Sinitcyn, Pavel, Mann, Matthias, Cox, Juergen

Journal:

Year:

2015

Language:

english

File:

PDF, 452 KB

english, 2015

12

ASYMMETRIC TRANSITION AND TIME-SCALE SEPARATION IN INTERLINKED POSITIVE FEEDBACK LOOPS

YORDANOV, PENCHO, TYANOVA, STEFKA, HÜTT, MARC-THORSTEN, LESNE, ANNICK

Journal:

International Journal of Bifurcation and Chaos

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

13

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

Tyanova, Stefka, Cox, Jürgen, Olsen, Jesper, Mann, Matthias, Frishman, Dmitrij, Iakoucheva, Lilia M.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 740 KB

english, 2013

14

Proteomic maps of breast cancer subtypes

Tyanova, Stefka, Albrechtsen, Reidar, Kronqvist, Pauliina, Cox, Juergen, Mann, Matthias, Geiger, Tamar

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1002 KB

english, 2016

15

The Proteome of Primary Prostate Cancer

Iglesias-Gato, Diego, Wikström, Pernilla, Tyanova, Stefka, Lavallee, Charlotte, Thysell, Elin, Carlsson, Jessica, Hägglöf, Christina, Cox, Jürgen, Andrén, Ove, Stattin, Pär, Egevad, Lars, Widmark, And

Journal:

European Urology

Year:

2015

Language:

english

File:

PDF, 2.22 MB

english, 2015

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